This gene encodes a member of the C1 family of peptidases. Alternative splicing of this gene results in multiple transcript variants. At least one of these variants encodes a preproprotein that is proteolytically processed to generate multiple protein products. These products include the cathepsin B light and heavy chains, which can dimerize to form the double chain form of the enzyme. This enzyme is a lysosomal cysteine protease with both endopeptidase and exopeptidase activity that may play a role in protein turnover. It is also known as amyloid precursor protein secretase and is involved in the proteolytic processing of amyloid precursor protein (APP). Incomplete proteolytic processing of APP has been suggested to be a causative factor in Alzheimer's disease, the most common cause of dementia. Overexpression of the encoded protein has been associated with esophageal adenocarcinoma and other tumors. Both Cathepsin B and Cathepsin L are involved in the cleavage of the spike protein from the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) upon its entry to the human host cell. Multiple pseudogenes of this gene have been identified. [provided by RefSeq, Sep 2020]
Transcription factors with Perturb-seq knockdown data for CTSB. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CTSB upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CTSB, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr8:11,617,248–11,618,158 | 250.3 kb | Distal (>10kb) Multiome | 126 | |
| chr8:11,632,784–11,633,414 | 235.0 kb | Distal (>10kb) Multiome | 233 | |
| chr8:11,642,077–11,643,101 | 225.5 kb | Distal (>10kb) Multiome | 247 | |
| chr8:11,660,832–11,661,535 | 206.9 kb | Distal (>10kb) Multiome | 21 | |
| chr8:11,682,733–11,683,887 | 184.9 kb | Distal (>10kb) Multiome | 157 | |
| chr8:11,702,714–11,704,461 | 165.0 kb | Distal (>10kb) Multiome | 687 | |
| chr8:11,708,271–11,710,646 | 158.0 kb | Distal (>10kb) Multiome | 246 | |
| chr8:11,736,329–11,736,895 | 131.6 kb | Distal (>10kb) Multiome | 615 | |
| chr8:11,743,316–11,744,611 | 123.9 kb | Distal (>10kb) Multiome | 243 | |
| chr8:11,769,172–11,770,442 | 98.4 kb | Distal (>10kb) Multiome | 764 | |
| chr8:11,801,766–11,803,423 | 65.5 kb | Distal (>10kb) Multiome | 901 | |
| chr8:11,807,986–11,809,046 | 59.7 kb | Distal (>10kb) Multiome | 514 | |
| chr8:11,867,298–11,868,997 | 17 bp | At TSS Multiome | 752 | |
| chr8:11,902,256–11,902,767 | 34.4 kb | Distal (>10kb) Multiome | 604 | |
| chr8:11,986,166–11,987,022 | 118.5 kb | Distal (>10kb) Multiome | 233 |
Genomic view of the CTSB locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.