CTSB
cathepsin B

This gene encodes a member of the C1 family of peptidases. Alternative splicing of this gene results in multiple transcript variants. At least one of these variants encodes a preproprotein that is proteolytically processed to generate multiple protein products. These products include the cathepsin B light and heavy chains, which can dimerize to form the double chain form of the enzyme. This enzyme is a lysosomal cysteine protease with both endopeptidase and exopeptidase activity that may play a role in protein turnover. It is also known as amyloid precursor protein secretase and is involved in the proteolytic processing of amyloid precursor protein (APP). Incomplete proteolytic processing of APP has been suggested to be a causative factor in Alzheimer's disease, the most common cause of dementia. Overexpression of the encoded protein has been associated with esophageal adenocarcinoma and other tumors. Both Cathepsin B and Cathepsin L are involved in the cleavage of the spike protein from the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) upon its entry to the human host cell. Multiple pseudogenes of this gene have been identified. [provided by RefSeq, Sep 2020]

Developmental clusters: GC2
Biological processes 41 terms
Expression (TPM)
CTSB — as a Regulated Gene

TFs regulating CTSB 0 TFs

Transcription factors with Perturb-seq knockdown data for CTSB. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CTSB upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to CTSB

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CTSB, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr8:11,617,248–11,618,158 250.3 kb Distal (>10kb) Multiome 126
chr8:11,632,784–11,633,414 235.0 kb Distal (>10kb) Multiome 233
chr8:11,642,077–11,643,101 225.5 kb Distal (>10kb) Multiome 247
chr8:11,660,832–11,661,535 206.9 kb Distal (>10kb) Multiome 21
chr8:11,682,733–11,683,887 184.9 kb Distal (>10kb) Multiome 157
chr8:11,702,714–11,704,461 165.0 kb Distal (>10kb) Multiome 687
chr8:11,708,271–11,710,646 158.0 kb Distal (>10kb) Multiome 246
chr8:11,736,329–11,736,895 131.6 kb Distal (>10kb) Multiome 615
chr8:11,743,316–11,744,611 123.9 kb Distal (>10kb) Multiome 243
chr8:11,769,172–11,770,442 98.4 kb Distal (>10kb) Multiome 764
chr8:11,801,766–11,803,423 65.5 kb Distal (>10kb) Multiome 901
chr8:11,807,986–11,809,046 59.7 kb Distal (>10kb) Multiome 514
chr8:11,867,298–11,868,997 17 bp At TSS Multiome 752
chr8:11,902,256–11,902,767 34.4 kb Distal (>10kb) Multiome 604
chr8:11,986,166–11,987,022 118.5 kb Distal (>10kb) Multiome 233

Genome Browser

Genomic view of the CTSB locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr8:11,607,248 – 11,997,022
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq