COX4I1
cytochrome c oxidase subunit 4I1 | COX4-1, COXIV, COXIV-1, COX4

Cytochrome c oxidase (COX) is the terminal enzyme of the mitochondrial respiratory chain. It is a multi-subunit enzyme complex that couples the transfer of electrons from cytochrome c to molecular oxygen and contributes to a proton electrochemical gradient across the inner mitochondrial membrane. The complex consists of 13 mitochondrial- and nuclear-encoded subunits. The mitochondrially-encoded subunits perform the electron transfer and proton pumping activities. The functions of the nuclear-encoded subunits are unknown but they may play a role in the regulation and assembly of the complex. This gene encodes the nuclear-encoded subunit IV isoform 1 of the human mitochondrial respiratory chain enzyme. It is located at the 3' of the NOC4 (neighbor of COX4) gene in a head-to-head orientation, and shares a promoter with it. Pseudogenes related to this gene are located on chromosomes 13 and 14. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2016]

Member of: DE-1 DE-1.24
Biological processes 26 terms
Expression (TPM)
COX4I1 — as a Regulated Gene

TFs regulating COX4I1 0 TFs

Transcription factors with Perturb-seq knockdown data for COX4I1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = COX4I1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to COX4I1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of COX4I1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr16:85,535,241–85,535,831 264.1 kb Distal (>10kb) Multiome 750
chr16:85,553,072–85,554,550 246.1 kb Distal (>10kb) Multiome 903
chr16:85,555,000–85,555,782 244.1 kb Distal (>10kb) Multiome 640
chr16:85,556,561–85,557,310 242.7 kb Distal (>10kb) Multiome 522
chr16:85,566,304–85,567,587 232.6 kb Distal (>10kb) Multiome 510
chr16:85,607,130–85,608,222 192.0 kb Distal (>10kb) Multiome 299
chr16:85,610,026–85,614,714 185.3 kb Distal (>10kb) Multiome 1297
chr16:85,615,828–85,616,352 183.6 kb Distal (>10kb) Multiome 462
chr16:85,688,630–85,689,464 110.5 kb Distal (>10kb) Multiome 742
chr16:85,750,820–85,751,405 48.5 kb Distal (>10kb) Multiome 317
chr16:85,798,348–85,798,716 920 bp At TSS 156
chr16:85,798,853–85,800,250 1 bp At TSS Multiome 921
chr16:85,898,542–85,899,371 99.4 kb Distal (>10kb) Multiome 380

Genome Browser

Genomic view of the COX4I1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr16:85,525,241 – 85,909,371
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq