Cytochrome c oxidase (COX) is the terminal enzyme of the mitochondrial respiratory chain. It is a multi-subunit enzyme complex that couples the transfer of electrons from cytochrome c to molecular oxygen and contributes to a proton electrochemical gradient across the inner mitochondrial membrane. The complex consists of 13 mitochondrial- and nuclear-encoded subunits. The mitochondrially-encoded subunits perform the electron transfer and proton pumping activities. The functions of the nuclear-encoded subunits are unknown but they may play a role in the regulation and assembly of the complex. This gene encodes the nuclear-encoded subunit IV isoform 1 of the human mitochondrial respiratory chain enzyme. It is located at the 3' of the NOC4 (neighbor of COX4) gene in a head-to-head orientation, and shares a promoter with it. Pseudogenes related to this gene are located on chromosomes 13 and 14. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2016]
Transcription factors with Perturb-seq knockdown data for COX4I1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = COX4I1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of COX4I1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:85,535,241–85,535,831 | 264.1 kb | Distal (>10kb) Multiome | 750 | |
| chr16:85,553,072–85,554,550 | 246.1 kb | Distal (>10kb) Multiome | 903 | |
| chr16:85,555,000–85,555,782 | 244.1 kb | Distal (>10kb) Multiome | 640 | |
| chr16:85,556,561–85,557,310 | 242.7 kb | Distal (>10kb) Multiome | 522 | |
| chr16:85,566,304–85,567,587 | 232.6 kb | Distal (>10kb) Multiome | 510 | |
| chr16:85,607,130–85,608,222 | 192.0 kb | Distal (>10kb) Multiome | 299 | |
| chr16:85,610,026–85,614,714 | 185.3 kb | Distal (>10kb) Multiome | 1297 | |
| chr16:85,615,828–85,616,352 | 183.6 kb | Distal (>10kb) Multiome | 462 | |
| chr16:85,688,630–85,689,464 | 110.5 kb | Distal (>10kb) Multiome | 742 | |
| chr16:85,750,820–85,751,405 | 48.5 kb | Distal (>10kb) Multiome | 317 | |
| chr16:85,798,348–85,798,716 | 920 bp | At TSS | 156 | |
| chr16:85,798,853–85,800,250 | 1 bp | At TSS Multiome | 921 | |
| chr16:85,898,542–85,899,371 | 99.4 kb | Distal (>10kb) Multiome | 380 |
Genomic view of the COX4I1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.