CCDC92B
coiled-coil domain containing 92B
Expression (TPM)
CCDC92B — as a Regulated Gene

TFs regulating CCDC92B 0 TFs

Transcription factors with Perturb-seq knockdown data for CCDC92B. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CCDC92B upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to CCDC92B

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CCDC92B, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr17:2,511,517–2,512,317 237.7 kb Distal (>10kb) Multiome 698
chr17:2,592,971–2,594,792 156.0 kb Distal (>10kb) Multiome 853
chr17:2,691,692–2,692,319 57.7 kb Distal (>10kb) Multiome 66
chr17:2,710,909–2,712,254 37.8 kb Distal (>10kb) Multiome 864
chr17:2,716,507–2,717,103 32.9 kb Distal (>10kb) Multiome 112
chr17:2,723,482–2,725,106 25.7 kb Distal (>10kb) Multiome 477
chr17:2,749,134–2,750,125 197 bp At TSS Multiome 859
chr17:2,755,248–2,756,668 5.9 kb Proximal (<10kb) Multiome 347
chr17:2,776,093–2,777,278 27.1 kb Distal (>10kb) Multiome 372
chr17:2,786,083–2,786,614 36.8 kb Distal (>10kb) Multiome 526
chr17:2,852,945–2,854,316 104.1 kb Distal (>10kb) Multiome 362
chr17:2,874,180–2,874,725 124.8 kb Distal (>10kb) Multiome 101
chr17:2,929,950–2,930,517 180.6 kb Distal (>10kb) Multiome 170
chr17:3,048,574–3,049,576 299.4 kb Distal (>10kb) Multiome 636

Genome Browser

Genomic view of the CCDC92B locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr17:2,501,517 – 3,059,576
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq