Transcription factors with Perturb-seq knockdown data for CBX3P1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = CBX3P1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of CBX3P1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr11:27,795,831–27,797,062 | 9.4 kb | Proximal (<10kb) | 361 | |
| chr11:27,801,035–27,801,462 | 5.0 kb | Proximal (<10kb) | 5 | |
| chr11:27,805,390–27,805,763 | 678 bp | At TSS | 8 | |
| chr11:27,806,219–27,806,449 | at TSS | At TSS | 63 |
Genomic view of the CBX3P1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.