Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within bone development. Predicted to be located in chromatin. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for BBX. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = BBX upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of BBX, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr3:107,240,198–107,241,589 | 282.3 kb | Distal (>10kb) Multiome | 500 | |
| chr3:107,284,662–107,285,977 | 237.6 kb | Distal (>10kb) Multiome | 210 | |
| chr3:107,429,360–107,430,595 | 93.0 kb | Distal (>10kb) Multiome | 428 | |
| chr3:107,430,965–107,432,148 | 91.2 kb | Distal (>10kb) Multiome | 577 | |
| chr3:107,522,248–107,524,359 | 133 bp | At TSS Multiome | 803 | |
| chr3:107,524,555–107,526,024 | 1.6 kb | Proximal (<10kb) | 451 | |
| chr3:107,598,662–107,599,385 | 76.1 kb | Distal (>10kb) Multiome | 393 |
Genomic view of the BBX locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.