ATP5MF
ATP synthase membrane subunit f | ATP5JL, ATP5J2

Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. It is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, which comprises the proton channel. The catalytic portion of mitochondrial ATP synthase consists of five different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and single representatives of the gamma, delta, and epsilon subunits. The proton channel likely has nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene encodes the f subunit of the Fo complex. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene. This gene has multiple pseudogenes. Naturally occurring read-through transcription also exists between this gene and the downstream pentatricopeptide repeat domain 1 (PTCD1) gene. [provided by RefSeq, Nov 2010]

Member of: DE-1 DE-1.10
Biological processes 16 terms
Expression (TPM)
ATP5MF — as a Regulated Gene

TFs regulating ATP5MF 0 TFs

Transcription factors with Perturb-seq knockdown data for ATP5MF. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ATP5MF upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to ATP5MF

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ATP5MF, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr7:99,325,304–99,326,401 140.3 kb Distal (>10kb) Multiome 858
chr7:99,373,955–99,375,619 90.6 kb Distal (>10kb) Multiome 759
chr7:99,392,361–99,394,025 73.0 kb Distal (>10kb) Multiome 486
chr7:99,407,975–99,409,432 57.4 kb Distal (>10kb) Multiome 975
chr7:99,438,371–99,439,668 27.1 kb Distal (>10kb) Multiome 881
chr7:99,465,842–99,466,381 18 bp At TSS Multiome 949
chr7:99,471,690–99,473,325 6.6 kb Proximal (<10kb) Multiome 861
chr7:99,499,759–99,500,629 34.1 kb Distal (>10kb) Multiome 809
chr7:99,504,224–99,505,507 38.6 kb Distal (>10kb) Multiome 881
chr7:99,557,927–99,559,319 92.5 kb Distal (>10kb) Multiome 922
chr7:99,580,108–99,580,792 114.2 kb Distal (>10kb) Multiome 296
chr7:99,616,474–99,617,353 150.7 kb Distal (>10kb) Multiome 1043
chr7:99,693,257–99,693,867 227.4 kb Distal (>10kb) Multiome 518

Genome Browser

Genomic view of the ATP5MF locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr7:99,315,304 – 99,703,867
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq