Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. It is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, which comprises the proton channel. The catalytic portion of mitochondrial ATP synthase consists of five different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and single representatives of the gamma, delta, and epsilon subunits. The proton channel likely has nine subunits (a, b, c, d, e, f, g, F6 and 8). This gene encodes the f subunit of the Fo complex. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene. This gene has multiple pseudogenes. Naturally occurring read-through transcription also exists between this gene and the downstream pentatricopeptide repeat domain 1 (PTCD1) gene. [provided by RefSeq, Nov 2010]
Transcription factors with Perturb-seq knockdown data for ATP5MF. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ATP5MF upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ATP5MF, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:99,325,304–99,326,401 | 140.3 kb | Distal (>10kb) Multiome | 858 | |
| chr7:99,373,955–99,375,619 | 90.6 kb | Distal (>10kb) Multiome | 759 | |
| chr7:99,392,361–99,394,025 | 73.0 kb | Distal (>10kb) Multiome | 486 | |
| chr7:99,407,975–99,409,432 | 57.4 kb | Distal (>10kb) Multiome | 975 | |
| chr7:99,438,371–99,439,668 | 27.1 kb | Distal (>10kb) Multiome | 881 | |
| chr7:99,465,842–99,466,381 | 18 bp | At TSS Multiome | 949 | |
| chr7:99,471,690–99,473,325 | 6.6 kb | Proximal (<10kb) Multiome | 861 | |
| chr7:99,499,759–99,500,629 | 34.1 kb | Distal (>10kb) Multiome | 809 | |
| chr7:99,504,224–99,505,507 | 38.6 kb | Distal (>10kb) Multiome | 881 | |
| chr7:99,557,927–99,559,319 | 92.5 kb | Distal (>10kb) Multiome | 922 | |
| chr7:99,580,108–99,580,792 | 114.2 kb | Distal (>10kb) Multiome | 296 | |
| chr7:99,616,474–99,617,353 | 150.7 kb | Distal (>10kb) Multiome | 1043 | |
| chr7:99,693,257–99,693,867 | 227.4 kb | Distal (>10kb) Multiome | 518 |
Genomic view of the ATP5MF locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.