This gene encodes a neuron-restricted protein that contains a CRAL-TRIO motif common to proteins that bind small lipophilic molecules. Mutations in this gene are associated with cerebellar ataxia, Cayman type. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for ATCAY. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ATCAY upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ATCAY, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:3,606,342–3,607,177 | 273.8 kb | Distal (>10kb) Multiome | 377 | |
| chr19:3,626,518–3,627,304 | 253.7 kb | Distal (>10kb) Multiome | 833 | |
| chr19:3,699,968–3,700,899 | 180.2 kb | Distal (>10kb) Multiome | 489 | |
| chr19:3,721,462–3,721,997 | 159.0 kb | Distal (>10kb) Multiome | 760 | |
| chr19:3,722,652–3,723,093 | 157.8 kb | Distal (>10kb) Multiome | 106 | |
| chr19:3,761,103–3,762,150 | 119.0 kb | Distal (>10kb) Multiome | 839 | |
| chr19:3,762,300–3,763,344 | 117.7 kb | Distal (>10kb) Multiome | 817 | |
| chr19:3,868,451–3,869,181 | 11.6 kb | Distal (>10kb) Multiome | 233 | |
| chr19:3,932,937–3,933,664 | 52.6 kb | Distal (>10kb) Multiome | 198 | |
| chr19:3,968,623–3,969,280 | 88.2 kb | Distal (>10kb) Multiome | 547 | |
| chr19:3,970,535–3,971,713 | 90.5 kb | Distal (>10kb) Multiome | 728 | |
| chr19:3,985,032–3,985,862 | 104.7 kb | Distal (>10kb) Multiome | 932 | |
| chr19:4,006,992–4,008,553 | 126.9 kb | Distal (>10kb) Multiome | 888 | |
| chr19:4,064,058–4,067,782 | 185.3 kb | Distal (>10kb) Multiome | 811 | |
| chr19:4,123,681–4,124,581 | 243.5 kb | Distal (>10kb) Multiome | 798 |
Genomic view of the ATCAY locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.