Ankyrins are a family of proteins that link the integral membrane proteins to the underlying spectrin-actin cytoskeleton and play key roles in activities such as cell motility, activation, proliferation, contact and the maintenance of specialized membrane domains. Multiple isoforms of ankyrin with different affinities for various target proteins are expressed in a tissue-specific, developmentally regulated manner. Most ankyrins are typically composed of three structural domains: an amino-terminal domain containing multiple ankyrin repeats; a central region with a highly conserved spectrin binding domain; and a carboxy-terminal regulatory domain which is the least conserved and subject to variation. Ankyrin 1, the prototype of this family, was first discovered in the erythrocytes, but since has also been found in brain and muscles. Mutations in erythrocytic ankyrin 1 have been associated in approximately half of all patients with hereditary spherocytosis. Complex patterns of alternative splicing in the regulatory domain, giving rise to different isoforms of ankyrin 1 have been described. Truncated muscle-specific isoforms of ankyrin 1 resulting from usage of an alternate promoter have also been identified. [provided by RefSeq, Dec 2008]
Transcription factors with Perturb-seq knockdown data for ANK1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ANK1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ANK1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr8:41,489,933–41,491,073 | 277.0 kb | Distal (>10kb) Multiome | 716 | |
| chr8:41,528,584–41,529,537 | 238.3 kb | Distal (>10kb) Multiome | 730 | |
| chr8:41,567,337–41,567,862 | 200.0 kb | Distal (>10kb) Multiome | 108 | |
| chr8:41,577,579–41,578,739 | 189.3 kb | Distal (>10kb) Multiome | 755 | |
| chr8:41,646,199–41,646,780 | 121.0 kb | Distal (>10kb) Multiome | 132 | |
| chr8:41,653,451–41,654,479 | 113.5 kb | Distal (>10kb) Multiome | 235 | |
| chr8:41,701,707–41,702,358 | 65.6 kb | Distal (>10kb) Multiome | 481 | |
| chr8:41,766,804–41,768,073 | 180 bp | At TSS Multiome | 304 | |
| chr8:41,828,115–41,829,096 | 61.0 kb | Distal (>10kb) Multiome | 805 | |
| chr8:41,895,762–41,897,697 | 128.6 kb | Distal (>10kb) Multiome | 781 | |
| chr8:42,050,725–42,052,921 | 284.7 kb | Distal (>10kb) Multiome | 1042 |
Genomic view of the ANK1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.