ANK1
ankyrin 1 | SPH1, ANK

Ankyrins are a family of proteins that link the integral membrane proteins to the underlying spectrin-actin cytoskeleton and play key roles in activities such as cell motility, activation, proliferation, contact and the maintenance of specialized membrane domains. Multiple isoforms of ankyrin with different affinities for various target proteins are expressed in a tissue-specific, developmentally regulated manner. Most ankyrins are typically composed of three structural domains: an amino-terminal domain containing multiple ankyrin repeats; a central region with a highly conserved spectrin binding domain; and a carboxy-terminal regulatory domain which is the least conserved and subject to variation. Ankyrin 1, the prototype of this family, was first discovered in the erythrocytes, but since has also been found in brain and muscles. Mutations in erythrocytic ankyrin 1 have been associated in approximately half of all patients with hereditary spherocytosis. Complex patterns of alternative splicing in the regulatory domain, giving rise to different isoforms of ankyrin 1 have been described. Truncated muscle-specific isoforms of ankyrin 1 resulting from usage of an alternate promoter have also been identified. [provided by RefSeq, Dec 2008]

Biological processes 47 terms
A band (GO:0031672)ATPase binding (GO:0051117)Golgi vesicle transport (GO:0048193)M band (GO:0031430)Z disc (GO:0030018)ankyrin-1 complex (GO:0170014)axolemma (GO:0030673)basolateral plasma membrane (GO:0016323)cell periphery (GO:0071944)cytoplasm (GO:0005737)cytoplasmic side of plasma membrane (GO:0009898)cytoskeletal anchor activity (GO:0008093)cytoskeletal anchor activity (GO:0008093)cytoskeletal anchor activity (GO:0008093)cytoskeleton (GO:0005856)cytoskeleton (GO:0005856)cytoskeleton organization (GO:0007010)cytosol (GO:0005829)endoplasmic reticulum to Golgi vesicle-mediated transport (GO:0006888)enzyme binding (GO:0019899)enzyme binding (GO:0019899)exocytosis (GO:0006887)maintenance of epithelial cell apical/basal polarity (GO:0045199)membrane (GO:0016020)neuron projection (GO:0043005)plasma membrane (GO:0005886)plasma membrane (GO:0005886)plasma membrane (GO:0005886)postsynaptic membrane (GO:0045211)protein binding (GO:0005515)protein localization to cell periphery (GO:1990778)protein localization to plasma membrane (GO:0072659)protein localization to plasma membrane (GO:0072659)protein phosphatase binding (GO:0019903)sarcolemma (GO:0042383)sarcoplasmic reticulum (GO:0016529)signal transduction (GO:0007165)spectrin binding (GO:0030507)spectrin binding (GO:0030507)spectrin binding (GO:0030507)spectrin binding (GO:0030507)spectrin-associated cytoskeleton (GO:0014731)spectrin-associated cytoskeleton (GO:0014731)structural constituent of cytoskeleton (GO:0005200)structural constituent of cytoskeleton (GO:0005200)structural molecule activity (GO:0005198)transmembrane transporter binding (GO:0044325)
Expression (TPM)
ANK1 — as a Regulated Gene

TFs regulating ANK1 0 TFs

Transcription factors with Perturb-seq knockdown data for ANK1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ANK1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to ANK1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ANK1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr8:41,489,933–41,491,073 277.0 kb Distal (>10kb) Multiome 716
chr8:41,528,584–41,529,537 238.3 kb Distal (>10kb) Multiome 730
chr8:41,567,337–41,567,862 200.0 kb Distal (>10kb) Multiome 108
chr8:41,577,579–41,578,739 189.3 kb Distal (>10kb) Multiome 755
chr8:41,646,199–41,646,780 121.0 kb Distal (>10kb) Multiome 132
chr8:41,653,451–41,654,479 113.5 kb Distal (>10kb) Multiome 235
chr8:41,701,707–41,702,358 65.6 kb Distal (>10kb) Multiome 481
chr8:41,766,804–41,768,073 180 bp At TSS Multiome 304
chr8:41,828,115–41,829,096 61.0 kb Distal (>10kb) Multiome 805
chr8:41,895,762–41,897,697 128.6 kb Distal (>10kb) Multiome 781
chr8:42,050,725–42,052,921 284.7 kb Distal (>10kb) Multiome 1042

Genome Browser

Genomic view of the ANK1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr8:41,479,933 – 42,062,921
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq