chr13 : 44,134,611 44,135,456
845 bp 6 TFs 2 linked genes
This 845 bp open chromatin element is linked to LINC00390 and SMIM2-AS1 and is bound by 6 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC00390 6.6 kb Proximal Proximity
SMIM2-AS1 6.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:44,129,611 – 44,140,456
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
6 transcription factors
Source
Cell type
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 578 bp overlap
ChIP DE DE-FOXA2-2 776 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 264 bp overlap
ChIP DE DE-GATA4-1 637 bp overlap
ChIP DE DE-GATA4-2 787 bp overlap
GATA6 3 datasets
ChIP AGS GSE51936.GATA6.AGS 85 bp overlap
ChIP DE DE-GATA6-1 690 bp overlap
ChIP DE DE-GATA6-2 704 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 737 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 808 bp overlap