chr12 : 100,578,596 100,578,756
160 bp 3 TFs 2 linked genes
This 160 bp open chromatin element is linked to PIGAP1 and GAS2L3 and is bound by DUX4, SMAD2-3, and SMAD2_3.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
PIGAP1 at TSS At TSS Proximity
GAS2L3 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:100,573,596 – 100,583,756
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
3 transcription factors
Source
Cell type
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 135 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 160 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 160 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 160 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 157 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 160 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 160 bp overlap