chr9 : 39,828,536 39,828,737
201 bp 2 TFs 1 linked gene
This 201 bp open chromatin element is linked to FGF7P3 and is bound by CTCF and STAG1.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
FGF7P3 9.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:39,823,536 – 39,833,737
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
2 transcription factors
Source
Cell type
CTCF 87 datasets
ChIP A673 ENCFF123WOM 201 bp overlap
ChIP AG09309 ENCFF478XPS 115 bp overlap
ChIP AG09319 ENCFF401ZTN 201 bp overlap
ChIP AG10803 ENCFF549AQK 201 bp overlap
ChIP BE2C ENCFF757SRF 201 bp overlap
ChIP BJ ENCFF434HEC 201 bp overlap
ChIP D721Med ENCFF513FYD 201 bp overlap
ChIP DND-41 ENCFF913MRA 201 bp overlap
ChIP GM12864 ENCFF357DQE 201 bp overlap
ChIP GM12872 ENCFF697BYI 201 bp overlap
ChIP GM12873 ENCFF711LOS 201 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM23338 ENCFF772DML 139 bp overlap
ChIP H9 ENCFF152GTF 201 bp overlap
ChIP HCT116 ENCFF003KHP 201 bp overlap
ChIP HCT116 ENCFF209YMI 201 bp overlap
ChIP HEK293 ENCFF498RMM 189 bp overlap
ChIP HFF-Myc ENCFF680WYR 201 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 201 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 169 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 113 bp overlap
ChIP HepG2 ENCFF127KUP 201 bp overlap
ChIP HepG2 ENCFF194VBQ 201 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP HepG2 ENCFF757EKU 121 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 173 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF400DFR 201 bp overlap
ChIP K562 ENCFF598YSU 201 bp overlap
ChIP KMS-11 ENCFF853JKX 201 bp overlap
ChIP LNCAP ENCFF700QXT 201 bp overlap
ChIP Loucy ENCFF359TVQ 201 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 168 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 201 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 125 bp overlap
ChIP PC-3 ENCFF487TUI 201 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 201 bp overlap
ChIP SK-N-SH ENCFF575DMG 201 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 180 bp overlap
ChIP VCaP ENCFF858YQT 178 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 201 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 201 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 121 bp overlap
ChIP brain ENCFF067KUH 201 bp overlap
ChIP brain ENCFF163BBN 201 bp overlap
ChIP brain ENCFF685VRG 201 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 201 bp overlap
ChIP chondrocyte ENCFF134ORZ 201 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 121 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 201 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF457ZGY 201 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 201 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 201 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF749FBO 201 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF784LWO 201 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 201 bp overlap
ChIP endodermal cell ENCFF471YCZ 201 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 201 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 94 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 201 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 201 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 201 bp overlap
ChIP heart left ventricle ENCFF354HOQ 201 bp overlap
ChIP heart left ventricle ENCFF769GAB 201 bp overlap
ChIP heart left ventricle ENCFF888ERQ 201 bp overlap
ChIP heart right ventricle ENCFF725NNJ 201 bp overlap
ChIP hepatocyte ENCFF263BLJ 142 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 131 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 201 bp overlap
ChIP myotube ENCFF981UHL 201 bp overlap
ChIP nephron ENCFF411ACD 201 bp overlap
ChIP nephron ENCFF589HXU 201 bp overlap
ChIP nephron ENCFF972IQB 201 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 150 bp overlap
ChIP neural crest cell ENCFF182LWK 201 bp overlap
ChIP neural progenitor cell ENCFF420RBO 201 bp overlap
ChIP neural progenitor cell ENCFF581WPG 201 bp overlap
ChIP osteocyte ENCFF929FPD 201 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 201 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 201 bp overlap
ChIP right lobe of liver ENCFF011NDG 134 bp overlap
ChIP right lobe of liver ENCFF250KSY 201 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 201 bp overlap
ChIP smooth muscle cell ENCFF656FBT 201 bp overlap
ChIP thyroid gland ENCFF300RYK 201 bp overlap
ChIP tibial nerve ENCFF475AOE 201 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 201 bp overlap
STAG1 1 dataset
ChIP HepG2 ENCFF843EBZ 201 bp overlap