chr4 : 13,653,435 13,653,703
268 bp 4 TFs 1 linked gene
This 268 bp open chromatin element is linked to LINC01182 and is bound by GATA6, NANOG, SMAD2-3, and SMAD2_3.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01182 669 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:13,648,435 – 13,658,703
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
4 transcription factors
Source
Cell type
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 215 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 196 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 158 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 268 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 268 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 222 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 223 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 202 bp overlap