chr3 : 190,325,594 190,325,819
225 bp 7 TFs 2 linked genes
This 225 bp open chromatin element is linked to CLDN16 and CLDN1 and is bound by 7 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CLDN16 3.1 kb Proximal Proximity
CLDN1 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:190,320,594 – 190,330,819
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
7 transcription factors
Source
Cell type
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 225 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 225 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 209 bp overlap
NCAPH2 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 166 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 81 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 178 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 89 bp overlap
SMARCC1 1 dataset
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 187 bp overlap
TP53 1 dataset
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 148 bp overlap
TP63 1 dataset
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 54 bp overlap