Enables ubiquitin protein ligase activity. Involved in several processes, including cellular response to amino acid starvation; positive regulation of TORC1 signaling; and protein K6-linked ubiquitination. Located in cytosol and lysosomal membrane. Part of GATOR2 complex. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for WDR24. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = WDR24 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of WDR24, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:396,893–397,640 | 292.9 kb | Distal (>10kb) Multiome | 496 | |
| chr16:401,380–402,199 | 288.5 kb | Distal (>10kb) Multiome | 818 | |
| chr16:424,888–426,136 | 264.8 kb | Distal (>10kb) Multiome | 752 | |
| chr16:483,333–484,000 | 206.7 kb | Distal (>10kb) Multiome | 143 | |
| chr16:526,749–528,601 | 162.8 kb | Distal (>10kb) Multiome | 811 | |
| chr16:569,530–570,338 | 120.5 kb | Distal (>10kb) Multiome | 492 | |
| chr16:578,896–579,353 | 111.2 kb | Distal (>10kb) Multiome | 511 | |
| chr16:588,593–590,724 | 100.5 kb | Distal (>10kb) Multiome | 853 | |
| chr16:635,900–638,127 | 54.0 kb | Distal (>10kb) Multiome | 1021 | |
| chr16:641,491–643,007 | 48.5 kb | Distal (>10kb) Multiome | 856 | |
| chr16:648,795–649,829 | 41.1 kb | Distal (>10kb) Multiome | 862 | |
| chr16:660,457–661,656 | 29.5 kb | Distal (>10kb) Multiome | 456 | |
| chr16:667,633–668,442 | 22.4 kb | Distal (>10kb) Multiome | 838 | |
| chr16:678,847–681,585 | 10.4 kb | Distal (>10kb) Multiome | 803 | |
| chr16:683,618–684,859 | 6.0 kb | Proximal (<10kb) Multiome | 701 | |
| chr16:690,350–690,560 | at TSS | At TSS | 852 | |
| chr16:694,897–695,485 | 5.0 kb | Proximal (<10kb) Multiome | 390 | |
| chr16:705,242–706,468 | 15.6 kb | Distal (>10kb) Multiome | 248 | |
| chr16:714,577–716,048 | 24.7 kb | Distal (>10kb) Multiome | 555 | |
| chr16:720,434–721,963 | 31.0 kb | Distal (>10kb) Multiome | 966 | |
| chr16:726,310–729,144 | 36.6 kb | Distal (>10kb) Multiome | 736 | |
| chr16:740,359–741,596 | 50.7 kb | Distal (>10kb) Multiome | 897 | |
| chr16:787,564–789,160 | 98.1 kb | Distal (>10kb) Multiome | 635 | |
| chr16:807,352–808,044 | 117.5 kb | Distal (>10kb) Multiome | 600 | |
| chr16:813,330–813,960 | 123.4 kb | Distal (>10kb) Multiome | 325 | |
| chr16:970,016–971,733 | 280.6 kb | Distal (>10kb) Multiome | 800 | |
| chr16:980,014–982,920 | 291.0 kb | Distal (>10kb) Multiome | 499 |
Genomic view of the WDR24 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.