This gene is a member of the PDGF/VEGF growth factor family. It encodes a heparin-binding protein, which exists as a disulfide-linked homodimer. This growth factor induces proliferation and migration of vascular endothelial cells, and is essential for both physiological and pathological angiogenesis. Disruption of this gene in mice resulted in abnormal embryonic blood vessel formation. This gene is upregulated in many known tumors and its expression is correlated with tumor stage and progression. Elevated levels of this protein are found in patients with POEMS syndrome, also known as Crow-Fukase syndrome. Allelic variants of this gene have been associated with microvascular complications of diabetes 1 (MVCD1) and atherosclerosis. Alternatively spliced transcript variants encoding different isoforms have been described. There is also evidence for alternative translation initiation from upstream non-AUG (CUG) codons resulting in additional isoforms. A recent study showed that a C-terminally extended isoform is produced by use of an alternative in-frame translation termination codon via a stop codon readthrough mechanism, and that this isoform is antiangiogenic. Expression of some isoforms derived from the AUG start codon is regulated by a small upstream open reading frame, which is located within an internal ribosome entry site. The levels of VEGF are increased during infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), thus promoting inflammation by facilitating recruitment of inflammatory cells, and by increasing the level of angiopoietin II (Ang II), one of two products of the SARS-CoV-2 binding target, angiotensin-converting enzyme 2 (ACE2). In turn, Ang II facilitates the elevation of VEGF, thus forming a vicious cycle in the release of inflammatory cytokines. [provided by RefSeq, Jun 2020]
Transcription factors with Perturb-seq knockdown data for VEGFA. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = VEGFA upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of VEGFA, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr6:43,477,347–43,478,043 | 293.2 kb | Distal (>10kb) Multiome | 747 | |
| chr6:43,506,605–43,507,204 | 263.9 kb | Distal (>10kb) Multiome | 474 | |
| chr6:43,509,337–43,511,016 | 260.4 kb | Distal (>10kb) Multiome | 734 | |
| chr6:43,516,463–43,517,515 | 253.8 kb | Distal (>10kb) Multiome | 904 | |
| chr6:43,575,269–43,576,483 | 194.7 kb | Distal (>10kb) Multiome | 1044 | |
| chr6:43,628,488–43,630,447 | 140.6 kb | Distal (>10kb) Multiome | 1157 | |
| chr6:43,635,496–43,636,104 | 135.0 kb | Distal (>10kb) Multiome | 941 | |
| chr6:43,644,712–43,645,902 | 125.4 kb | Distal (>10kb) Multiome HiCAR | 255 | |
| chr6:43,667,273–43,667,900 | 103.4 kb | Distal (>10kb) Multiome HiCAR | 625 | |
| chr6:43,667,997–43,668,873 | 102.3 kb | Distal (>10kb) Multiome HiCAR | 664 | |
| chr6:43,695,239–43,695,940 | 75.1 kb | Distal (>10kb) Multiome | 207 | |
| chr6:43,702,335–43,703,403 | 67.8 kb | Distal (>10kb) Multiome | 713 | |
| chr6:43,706,840–43,708,370 | 62.8 kb | Distal (>10kb) Multiome | 307 | |
| chr6:43,739,421–43,740,065 | 31.0 kb | Distal (>10kb) Multiome | 175 | |
| chr6:43,769,188–43,772,162 | 787 bp | At TSS Multiome | 1112 | |
| chr6:43,772,701–43,772,925 | 2.5 kb | Proximal (<10kb) | 302 | |
| chr6:43,773,352–43,773,690 | 3.1 kb | Proximal (<10kb) | 478 | |
| chr6:43,774,651–43,775,250 | 4.2 kb | Proximal (<10kb) Multiome | 440 | |
| chr6:43,926,273–43,928,465 | 156.4 kb | Distal (>10kb) Multiome | 1000 | |
| chr6:43,951,107–43,951,921 | 180.7 kb | Distal (>10kb) Multiome HiCAR | 591 | |
| chr6:44,002,061–44,003,708 | 231.9 kb | Distal (>10kb) Multiome HiCAR | 581 |
Genomic view of the VEGFA locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.