Transcription factors with Perturb-seq knockdown data for TTC36-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TTC36-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TTC36-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr11:118,359,034–118,359,890 | 171.6 kb | Distal (>10kb) Multiome | 779 | |
| chr11:118,401,086–118,402,051 | 129.6 kb | Distal (>10kb) Multiome | 732 | |
| chr11:118,434,505–118,437,761 | 94.8 kb | Distal (>10kb) Multiome | 1053 | |
| chr11:118,522,586–118,522,957 | 8.1 kb | Proximal (<10kb) | 67 | |
| chr11:118,530,432–118,531,848 | 21 bp | At TSS Multiome | 763 | |
| chr11:118,571,906–118,572,919 | 41.3 kb | Distal (>10kb) Multiome | 760 | |
| chr11:118,610,391–118,611,672 | 80.0 kb | Distal (>10kb) Multiome | 488 | |
| chr11:118,620,694–118,621,880 | 90.3 kb | Distal (>10kb) Multiome | 683 | |
| chr11:118,634,418–118,635,567 | 103.9 kb | Distal (>10kb) Multiome | 475 | |
| chr11:118,659,166–118,660,029 | 128.6 kb | Distal (>10kb) Multiome | 459 | |
| chr11:118,689,268–118,690,813 | 159.0 kb | Distal (>10kb) Multiome | 804 | |
| chr11:118,715,577–118,717,605 | 185.0 kb | Distal (>10kb) Multiome | 445 | |
| chr11:118,790,448–118,793,117 | 261.9 kb | Distal (>10kb) Multiome | 958 |
Genomic view of the TTC36-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.