Transcription factors with Perturb-seq knockdown data for TLX1NB. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TLX1NB upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TLX1NB, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr10:101,123,352–101,123,698 | 7.4 kb | Proximal (<10kb) | 112 | |
| chr10:101,131,094–101,132,387 | at TSS | At TSS | 289 | |
| chr10:101,133,768–101,134,108 | 2.6 kb | Proximal (<10kb) | 94 | |
| chr10:101,139,407–101,140,520 | 8.3 kb | Proximal (<10kb) | 158 |
Genomic view of the TLX1NB locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.