Located in mitochondrion. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for TCAIM. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = TCAIM upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of TCAIM, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr3:44,337,649–44,339,009 | 452 bp | At TSS Multiome | 1024 | |
| chr3:44,477,346–44,478,014 | 139.5 kb | Distal (>10kb) Multiome | 561 | |
| chr3:44,510,368–44,511,080 | 172.6 kb | Distal (>10kb) Multiome HiCAR | 607 | |
| chr3:44,554,965–44,555,488 | 217.1 kb | Distal (>10kb) Multiome | 434 | |
| chr3:44,584,465–44,585,362 | 246.7 kb | Distal (>10kb) Multiome | 388 | |
| chr3:44,624,770–44,625,563 | 287.0 kb | Distal (>10kb) Multiome | 686 |
Genomic view of the TCAIM locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.