Transcription factors with Perturb-seq knockdown data for STIM2-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = STIM2-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of STIM2-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr4:26,857,192–26,858,131 | 2.5 kb | Proximal (<10kb) | 772 | |
| chr4:26,858,286–26,858,600 | 2.0 kb | Proximal (<10kb) | 127 | |
| chr4:26,859,867–26,862,050 | at TSS | At TSS | 911 | |
| chr4:26,866,137–26,866,654 | 5.5 kb | Proximal (<10kb) | 14 | |
| chr4:26,866,934–26,867,099 | 6.3 kb | Proximal (<10kb) | 35 |
Genomic view of the STIM2-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.