Transcription factors with Perturb-seq knockdown data for SMG1P7. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SMG1P7 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SMG1P7, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:70,250,987–70,252,565 | 4.4 kb | Proximal (<10kb) | 1128 | |
| chr16:70,252,688–70,252,867 | 6.1 kb | Proximal (<10kb) | 205 | |
| chr16:70,253,903–70,254,089 | 7.3 kb | Proximal (<10kb) | 134 |
Genomic view of the SMG1P7 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.