Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus. Predicted to be part of 90S preribosome and preribosome, small subunit precursor. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for SLX9. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SLX9 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SLX9, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr21:44,686,253–44,687,168 | 253.4 kb | Distal (>10kb) Multiome | 199 | |
| chr21:44,711,499–44,711,908 | 228.3 kb | Distal (>10kb) Multiome | 168 | |
| chr21:44,748,550–44,748,985 | 191.1 kb | Distal (>10kb) Multiome | 149 | |
| chr21:44,801,527–44,802,290 | 138.2 kb | Distal (>10kb) Multiome | 818 | |
| chr21:44,817,098–44,818,998 | 122.1 kb | Distal (>10kb) Multiome | 775 | |
| chr21:44,845,753–44,846,245 | 94.0 kb | Distal (>10kb) Multiome | 504 | |
| chr21:44,872,991–44,875,251 | 66.3 kb | Distal (>10kb) Multiome | 841 | |
| chr21:44,932,391–44,932,910 | 7.1 kb | Proximal (<10kb) | 279 | |
| chr21:44,939,797–44,940,292 | 41 bp | At TSS Multiome | 1041 | |
| chr21:44,949,822–44,950,053 | 9.8 kb | Proximal (<10kb) | 361 | |
| chr21:45,073,773–45,075,747 | 134.5 kb | Distal (>10kb) Multiome | 883 |
Genomic view of the SLX9 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.