SLC15A3
solute carrier family 15 member 3 | PHT2, hPTR3
SLC15A3 — as a Regulated Gene

TFs regulating SLC15A3 0 TFs

Transcription factors with Perturb-seq knockdown data for SLC15A3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SLC15A3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to SLC15A3

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SLC15A3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr11:60,775,417–60,775,969 176.0 kb Distal (>10kb) Multiome 374
chr11:60,841,541–60,842,740 109.6 kb Distal (>10kb) Multiome 839
chr11:60,852,120–60,853,076 98.9 kb Distal (>10kb) Multiome 186
chr11:60,906,047–60,907,006 45.0 kb Distal (>10kb) Multiome 787
chr11:60,913,771–60,914,957 37.6 kb Distal (>10kb) Multiome 710
chr11:60,915,279–60,915,720 36.0 kb Distal (>10kb) Multiome 296
chr11:60,923,955–60,925,328 27.2 kb Distal (>10kb) Multiome 668
chr11:60,950,921–60,951,656 427 bp At TSS Multiome 171
chr11:61,007,475–61,008,948 56.6 kb Distal (>10kb) Multiome 268
chr11:61,160,742–61,162,049 209.8 kb Distal (>10kb) Multiome 851

Genome Browser

Genomic view of the SLC15A3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr11:60,765,417 – 61,172,049
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq