This gene is a member of the septin family of GTPases. Members of this family are required for cytokinesis and the maintenance of cellular morphology. This gene encodes a protein that can form homo- and heterooligomeric filaments, and may contribute to the formation of neurofibrillary tangles in Alzheimer's disease. Alternatively spliced transcript variants have been found but the full-length nature of these variants has not been determined. [provided by RefSeq, Dec 2012]
Transcription factors with Perturb-seq knockdown data for SEPTIN1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = SEPTIN1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of SEPTIN1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:30,095,557–30,096,839 | 298.6 kb | Distal (>10kb) Multiome | 824 | |
| chr16:30,122,728–30,123,578 | 271.7 kb | Distal (>10kb) Multiome | 718 | |
| chr16:30,182,759–30,183,865 | 211.5 kb | Distal (>10kb) Multiome | 547 | |
| chr16:30,334,526–30,335,777 | 59.6 kb | Distal (>10kb) Multiome | 486 | |
| chr16:30,354,854–30,355,978 | 39.5 kb | Distal (>10kb) Multiome | 1070 | |
| chr16:30,369,220–30,371,611 | 24.1 kb | Distal (>10kb) Multiome | 818 | |
| chr16:30,377,495–30,379,532 | 16.5 kb | Distal (>10kb) Multiome | 1025 | |
| chr16:30,394,422–30,396,098 | 310 bp | At TSS Multiome | 941 | |
| chr16:30,400,026–30,401,048 | 5.7 kb | Proximal (<10kb) Multiome | 839 | |
| chr16:30,406,974–30,408,429 | 12.6 kb | Distal (>10kb) Multiome | 908 | |
| chr16:30,417,414–30,418,576 | 23.2 kb | Distal (>10kb) Multiome | 543 | |
| chr16:30,429,571–30,430,773 | 35.3 kb | Distal (>10kb) Multiome | 1060 | |
| chr16:30,445,340–30,446,062 | 50.9 kb | Distal (>10kb) Multiome | 898 | |
| chr16:30,526,068–30,527,896 | 132.5 kb | Distal (>10kb) Multiome | 1004 | |
| chr16:30,534,370–30,535,460 | 140.0 kb | Distal (>10kb) Multiome | 957 | |
| chr16:30,557,913–30,558,847 | 163.6 kb | Distal (>10kb) Multiome | 1025 | |
| chr16:30,571,001–30,572,505 | 177.1 kb | Distal (>10kb) Multiome | 950 | |
| chr16:30,585,243–30,586,223 | 190.9 kb | Distal (>10kb) Multiome | 588 | |
| chr16:30,609,586–30,610,748 | 215.5 kb | Distal (>10kb) Multiome | 1030 | |
| chr16:30,634,070–30,634,986 | 239.5 kb | Distal (>10kb) Multiome | 907 | |
| chr16:30,650,029–30,651,831 | 255.8 kb | Distal (>10kb) Multiome | 992 | |
| chr16:30,657,638–30,659,894 | 263.4 kb | Distal (>10kb) Multiome | 1053 | |
| chr16:30,677,814–30,678,622 | 283.3 kb | Distal (>10kb) Multiome | 177 |
Genomic view of the SEPTIN1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.