PWWP3A
PWWP domain containing 3A, DNA repair factor | EXPAND1, MUM-1, MUM1

Enables nucleosome binding activity. Involved in DNA repair and chromatin organization. Located in cytosol and nucleoplasm. [provided by Alliance of Genome Resources, Jul 2025]

Member of: DE-6
Biological processes 11 terms
Expression (TPM)
PWWP3A — as a Regulated Gene

TFs regulating PWWP3A 0 TFs

Transcription factors with Perturb-seq knockdown data for PWWP3A. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PWWP3A upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to PWWP3A

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PWWP3A, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr19:1,061,840–1,062,923 292.4 kb Distal (>10kb) Multiome 204
chr19:1,063,045–1,065,722 290.1 kb Distal (>10kb) Multiome 681
chr19:1,066,682–1,067,587 287.7 kb Distal (>10kb) Multiome 489
chr19:1,071,107–1,071,721 283.8 kb Distal (>10kb) Multiome 178
chr19:1,081,317–1,083,172 272.5 kb Distal (>10kb) Multiome 484
chr19:1,094,985–1,095,654 259.5 kb Distal (>10kb) Multiome 671
chr19:1,103,487–1,105,654 250.9 kb Distal (>10kb) Multiome 849
chr19:1,112,029–1,112,884 242.6 kb Distal (>10kb) Multiome 294
chr19:1,113,014–1,114,139 241.4 kb Distal (>10kb) Multiome 690
chr19:1,122,934–1,123,720 231.7 kb Distal (>10kb) Multiome 231
chr19:1,173,441–1,174,438 180.7 kb Distal (>10kb) Multiome 682
chr19:1,194,370–1,194,985 160.3 kb Distal (>10kb) Multiome 531
chr19:1,205,175–1,206,374 149.3 kb Distal (>10kb) Multiome 746
chr19:1,237,080–1,238,434 116.8 kb Distal (>10kb) Multiome 430
chr19:1,239,513–1,242,539 113.2 kb Distal (>10kb) Multiome 889
chr19:1,244,253–1,244,857 110.3 kb Distal (>10kb) Multiome 590
chr19:1,247,981–1,252,501 103.9 kb Distal (>10kb) Multiome 1136
chr19:1,259,185–1,262,955 95.5 kb Distal (>10kb) Multiome 1070
chr19:1,265,280–1,270,235 85.6 kb Distal (>10kb) Multiome 1171
chr19:1,274,423–1,276,502 79.2 kb Distal (>10kb) Multiome 967
chr19:1,285,317–1,286,108 69.1 kb Distal (>10kb) Multiome 277
chr19:1,354,303–1,355,411 41 bp At TSS Multiome 688
chr19:1,383,122–1,384,333 28.7 kb Distal (>10kb) Multiome 1228
chr19:1,401,101–1,401,839 46.6 kb Distal (>10kb) Multiome 540
chr19:1,406,589–1,408,783 52.5 kb Distal (>10kb) Multiome 911
chr19:1,415,008–1,415,721 60.6 kb Distal (>10kb) Multiome 597
chr19:1,437,988–1,438,998 83.4 kb Distal (>10kb) Multiome 1076
chr19:1,444,785–1,447,383 90.3 kb Distal (>10kb) Multiome 797
chr19:1,455,191–1,456,421 100.9 kb Distal (>10kb) Multiome 491
chr19:1,468,941–1,469,903 114.4 kb Distal (>10kb) Multiome 242
chr19:1,470,088–1,471,597 115.8 kb Distal (>10kb) Multiome 544
chr19:1,478,772–1,479,848 124.4 kb Distal (>10kb) Multiome 857
chr19:1,489,566–1,491,829 136.0 kb Distal (>10kb) Multiome 836
chr19:1,507,230–1,508,699 153.2 kb Distal (>10kb) Multiome 596
chr19:1,512,960–1,513,686 158.3 kb Distal (>10kb) Multiome 541
chr19:1,523,798–1,524,624 169.1 kb Distal (>10kb) Multiome 263
chr19:1,566,277–1,568,916 211.8 kb Distal (>10kb) Multiome 748
chr19:1,592,085–1,593,444 237.8 kb Distal (>10kb) Multiome 883
chr19:1,604,859–1,606,501 250.7 kb Distal (>10kb) Multiome 902
chr19:1,651,519–1,653,514 298.0 kb Distal (>10kb) Multiome 909

Genome Browser

Genomic view of the PWWP3A locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr19:1,051,840 – 1,663,514
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq