This gene encodes a cytoplasmic protein tyrosine kinase which is involved in calcium-induced regulation of ion channels and activation of the map kinase signaling pathway. The encoded protein may represent an important signaling intermediate between neuropeptide-activated receptors or neurotransmitters that increase calcium flux and the downstream signals that regulate neuronal activity. The encoded protein undergoes rapid tyrosine phosphorylation and activation in response to increases in the intracellular calcium concentration, nicotinic acetylcholine receptor activation, membrane depolarization, or protein kinase C activation. This protein has been shown to bind CRK-associated substrate, nephrocystin, GTPase regulator associated with FAK, and the SH2 domain of GRB2. The encoded protein is a member of the FAK subfamily of protein tyrosine kinases but lacks significant sequence similarity to kinases from other subfamilies. Four transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for PTK2B. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PTK2B upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PTK2B, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr8:27,147,013–27,147,707 | 164.2 kb | Distal (>10kb) Multiome | 88 | |
| chr8:27,274,263–27,275,075 | 37.1 kb | Distal (>10kb) Multiome | 573 | |
| chr8:27,310,458–27,311,925 | 197 bp | At TSS Multiome | 871 | |
| chr8:27,315,336–27,315,612 | 3.7 kb | Proximal (<10kb) | 404 | |
| chr8:27,323,824–27,324,007 | 1.5 kb | Proximal (<10kb) | 87 | |
| chr8:27,325,384–27,325,884 | at TSS | At TSS | 318 | |
| chr8:27,490,586–27,491,648 | 179.5 kb | Distal (>10kb) Multiome | 837 | |
| chr8:27,592,228–27,592,758 | 280.8 kb | Distal (>10kb) Multiome HiCAR | 524 | |
| chr8:27,608,493–27,608,956 | 297.2 kb | Distal (>10kb) Multiome | 168 | |
| chr8:27,614,194–27,615,207 | 303.2 kb | Distal (>10kb) Multiome | 844 |
Genomic view of the PTK2B locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.