PTK2B
protein tyrosine kinase 2 beta | CADTK, CAKB, PTK, PYK2, RAFTK, FAK2

This gene encodes a cytoplasmic protein tyrosine kinase which is involved in calcium-induced regulation of ion channels and activation of the map kinase signaling pathway. The encoded protein may represent an important signaling intermediate between neuropeptide-activated receptors or neurotransmitters that increase calcium flux and the downstream signals that regulate neuronal activity. The encoded protein undergoes rapid tyrosine phosphorylation and activation in response to increases in the intracellular calcium concentration, nicotinic acetylcholine receptor activation, membrane depolarization, or protein kinase C activation. This protein has been shown to bind CRK-associated substrate, nephrocystin, GTPase regulator associated with FAK, and the SH2 domain of GRB2. The encoded protein is a member of the FAK subfamily of protein tyrosine kinases but lacks significant sequence similarity to kinases from other subfamilies. Four transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Biological processes 121 terms
ATP binding (GO:0005524)NMDA selective glutamate receptor complex (GO:0017146)activation of Janus kinase activity (GO:0042976)apical dendrite (GO:0097440)apoptotic process (GO:0006915)bone resorption (GO:0045453)bone resorption (GO:0045453)calcium/calmodulin-dependent protein kinase activity (GO:0004683)cell body (GO:0044297)cell cortex (GO:0005938)cell junction (GO:0030054)cell surface receptor signaling pathway (GO:0007166)cellular defense response (GO:0006968)cellular response to retinoic acid (GO:0071300)chemokine-mediated signaling pathway (GO:0070098)chemokine-mediated signaling pathway (GO:0070098)cortical cytoskeleton organization (GO:0030865)cortical cytoskeleton organization (GO:0030865)cytoplasm (GO:0005737)cytoplasm (GO:0005737)cytosol (GO:0005829)cytosol (GO:0005829)dendrite (GO:0030425)endothelin receptor signaling pathway (GO:0086100)epidermal growth factor receptor signaling pathway (GO:0007173)focal adhesion (GO:0005925)focal adhesion (GO:0005925)focal adhesion (GO:0005925)glutamatergic synapse (GO:0098978)growth cone (GO:0030426)integrin-mediated signaling pathway (GO:0007229)integrin-mediated signaling pathway (GO:0007229)ionotropic glutamate receptor binding (GO:0035255)ionotropic glutamate receptor signaling pathway (GO:0035235)lamellipodium (GO:0030027)lamellipodium (GO:0030027)long-term synaptic potentiation (GO:0060291)marginal zone B cell differentiation (GO:0002315)marginal zone B cell differentiation (GO:0002315)negative regulation of apoptotic process (GO:0043066)negative regulation of apoptotic process (GO:0043066)negative regulation of bone mineralization (GO:0030502)negative regulation of bone mineralization (GO:0030502)negative regulation of cell population proliferation (GO:0008285)negative regulation of myeloid cell differentiation (GO:0045638)negative regulation of neuron apoptotic process (GO:0043524)negative regulation of potassium ion transport (GO:0043267)neuronal cell body (GO:0043025)neurotransmitter receptor regulator activity (GO:0099602)non-membrane spanning protein tyrosine kinase activity (GO:0004715)non-membrane spanning protein tyrosine kinase activity (GO:0004715)non-membrane spanning protein tyrosine kinase activity (GO:0004715)non-membrane spanning protein tyrosine kinase activity (GO:0004715)non-membrane spanning protein tyrosine kinase activity (GO:0004715)nucleus (GO:0005634)nucleus (GO:0005634)peptidyl-tyrosine autophosphorylation (GO:0038083)peptidyl-tyrosine phosphorylation (GO:0018108)perinuclear region of cytoplasm (GO:0048471)perinuclear region of cytoplasm (GO:0048471)plasma membrane (GO:0005886)plasma membrane (GO:0005886)plasma membrane (GO:0005886)positive regulation of B cell chemotaxis (GO:2000538)positive regulation of B cell chemotaxis (GO:2000538)positive regulation of ERK1 and ERK2 cascade (GO:0070374)positive regulation of JNK cascade (GO:0046330)positive regulation of actin filament polymerization (GO:0030838)positive regulation of angiogenesis (GO:0045766)positive regulation of cell adhesion (GO:0045785)positive regulation of cell migration (GO:0030335)positive regulation of cell migration (GO:0030335)positive regulation of cell migration (GO:0030335)positive regulation of cell population proliferation (GO:0008284)positive regulation of cell population proliferation (GO:0008284)positive regulation of cell population proliferation (GO:0008284)positive regulation of cell-matrix adhesion (GO:0001954)positive regulation of endothelial cell migration (GO:0010595)positive regulation of endothelial cell migration (GO:0010595)positive regulation of excitatory postsynaptic potential (GO:2000463)positive regulation of neuron projection development (GO:0010976)positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897)positive regulation of protein kinase activity (GO:0045860)positive regulation of protein metabolic process (GO:0051247)positive regulation of signal transduction (GO:0009967)positive regulation of synaptic transmission, glutamatergic (GO:0051968)positive regulation of ubiquitin-dependent protein catabolic process (GO:2000060)postsynaptic density (GO:0014069)postsynaptic density (GO:0014069)postsynaptic density, intracellular component (GO:0099092)presynapse (GO:0098793)protein autophosphorylation (GO:0046777)protein binding (GO:0005515)protein kinase activity (GO:0004672)protein tyrosine kinase activity (GO:0004713)protein tyrosine kinase activity (GO:0004713)protein tyrosine kinase activity (GO:0004713)protein-containing complex assembly (GO:0065003)regulation of actin cytoskeleton organization (GO:0032956)regulation of actin cytoskeleton organization (GO:0032956)regulation of cell adhesion (GO:0030155)regulation of cell adhesion (GO:0030155)regulation of cell shape (GO:0008360)regulation of cell shape (GO:0008360)regulation of cell-matrix adhesion (GO:0001952)regulation of macrophage chemotaxis (GO:0010758)regulation of macrophage chemotaxis (GO:0010758)regulation of multicellular organismal process (GO:0051239)regulation of postsynaptic density assembly (GO:0099151)regulation of release of sequestered calcium ion into cytosol (GO:0051279)regulation of release of sequestered calcium ion into cytosol (GO:0051279)regulation of synaptic plasticity (GO:0048167)regulation of ubiquitin-dependent protein catabolic process (GO:2000058)signal complex assembly (GO:0007172)signal transduction (GO:0007165)signaling receptor activator activity (GO:0030546)sprouting angiogenesis (GO:0002040)sprouting angiogenesis (GO:0002040)tumor necrosis factor-mediated signaling pathway (GO:0033209)vascular endothelial growth factor receptor signaling pathway (GO:0048010)vascular endothelial growth factor receptor signaling pathway (GO:0048010)
Expression (TPM)
PTK2B — as a Regulated Gene

TFs regulating PTK2B 0 TFs

Transcription factors with Perturb-seq knockdown data for PTK2B. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PTK2B upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to PTK2B

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PTK2B, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr8:27,147,013–27,147,707 164.2 kb Distal (>10kb) Multiome 88
chr8:27,274,263–27,275,075 37.1 kb Distal (>10kb) Multiome 573
chr8:27,310,458–27,311,925 197 bp At TSS Multiome 871
chr8:27,315,336–27,315,612 3.7 kb Proximal (<10kb) 404
chr8:27,323,824–27,324,007 1.5 kb Proximal (<10kb) 87
chr8:27,325,384–27,325,884 at TSS At TSS 318
chr8:27,490,586–27,491,648 179.5 kb Distal (>10kb) Multiome 837
chr8:27,592,228–27,592,758 280.8 kb Distal (>10kb) Multiome HiCAR 524
chr8:27,608,493–27,608,956 297.2 kb Distal (>10kb) Multiome 168
chr8:27,614,194–27,615,207 303.2 kb Distal (>10kb) Multiome 844

Genome Browser

Genomic view of the PTK2B locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr8:27,137,013 – 27,625,207
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq