Transcription factors with Perturb-seq knockdown data for PRDX6-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PRDX6-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PRDX6-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:173,448,455–173,449,477 | 28.2 kb | Distal (>10kb) Multiome | 138 | |
| chr1:173,474,492–173,475,513 | 2.1 kb | Proximal (<10kb) Multiome | 348 | |
| chr1:173,476,153–173,478,392 | 168 bp | At TSS Multiome | 991 | |
| chr1:173,669,068–173,669,991 | 192.7 kb | Distal (>10kb) Multiome | 247 | |
| chr1:173,714,634–173,715,651 | 238.0 kb | Distal (>10kb) Multiome | 1013 |
Genomic view of the PRDX6-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.