Predicted to enable phospholipase A2 activity. Predicted to be involved in lipid metabolic process. Located in extracellular exosome and lysosomal membrane. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for PGAP6. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = PGAP6 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of PGAP6, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:138,551–139,186 | 243.3 kb | Distal (>10kb) Multiome | 674 | |
| chr16:164,983–166,147 | 216.9 kb | Distal (>10kb) Multiome | 234 | |
| chr16:180,313–181,713 | 200.5 kb | Distal (>10kb) Multiome | 994 | |
| chr16:228,869–229,598 | 152.7 kb | Distal (>10kb) Multiome | 1035 | |
| chr16:234,152–235,669 | 147.2 kb | Distal (>10kb) Multiome | 908 | |
| chr16:351,804–354,436 | 29.0 kb | Distal (>10kb) Multiome | 654 | |
| chr16:378,999–379,813 | 2.6 kb | Proximal (<10kb) Multiome | 225 | |
| chr16:380,836–382,614 | 2 bp | At TSS Multiome | 634 | |
| chr16:383,438–384,218 | 1.9 kb | Proximal (<10kb) Multiome | 342 | |
| chr16:396,893–397,640 | 15.5 kb | Distal (>10kb) Multiome | 496 | |
| chr16:401,380–402,199 | 19.9 kb | Distal (>10kb) Multiome | 818 | |
| chr16:424,888–426,136 | 43.6 kb | Distal (>10kb) Multiome | 752 | |
| chr16:483,333–484,000 | 101.8 kb | Distal (>10kb) Multiome | 143 | |
| chr16:526,749–528,601 | 145.6 kb | Distal (>10kb) Multiome HiCAR | 811 | |
| chr16:569,530–570,338 | 187.9 kb | Distal (>10kb) Multiome | 492 | |
| chr16:578,896–579,353 | 197.2 kb | Distal (>10kb) Multiome | 511 | |
| chr16:588,593–590,724 | 207.9 kb | Distal (>10kb) Multiome HiCAR | 853 | |
| chr16:635,900–638,127 | 254.4 kb | Distal (>10kb) Multiome | 1021 | |
| chr16:641,491–643,007 | 259.9 kb | Distal (>10kb) Multiome | 856 | |
| chr16:648,795–649,829 | 267.3 kb | Distal (>10kb) Multiome | 862 | |
| chr16:660,457–661,656 | 279.0 kb | Distal (>10kb) Multiome | 456 | |
| chr16:667,633–668,442 | 286.0 kb | Distal (>10kb) Multiome | 838 | |
| chr16:678,847–681,585 | 298.1 kb | Distal (>10kb) Multiome | 803 |
Genomic view of the PGAP6 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.