This gene encodes a protein originally thought to be related to the collagenase gene family. This gene is one of three highly similar genes in a region of duplication located on the p arm of chromosome 16. These three genes encode closely related proteins that may have the same function. The protein encoded by one of these genes has been identified as part of a protein complex that participates in the Nodal signaling pathway during vertebrate development. Mutations in ABCC6, which is located nearby, rather than mutations in this gene are associated with pseudoxanthoma elasticum (PXE). [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for NOMO1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = NOMO1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of NOMO1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:14,629,609–14,630,730 | 203.5 kb | Distal (>10kb) Multiome | 944 | |
| chr16:14,632,578–14,633,576 | 200.9 kb | Distal (>10kb) Multiome | 922 | |
| chr16:14,633,713–14,634,477 | 199.5 kb | Distal (>10kb) Multiome | 481 | |
| chr16:14,833,564–14,833,790 | at TSS | At TSS | 74 | |
| chr16:14,974,545–14,975,548 | 141.3 kb | Distal (>10kb) Multiome | 715 | |
| chr16:15,055,512–15,056,581 | 222.4 kb | Distal (>10kb) Multiome | 868 | |
| chr16:15,546,648–15,547,130 | 713.2 kb | Distal (>10kb) Multiome HiCAR | 20 | |
| chr16:15,649,782–15,650,732 | 816.5 kb | Distal (>10kb) Multiome HiCAR | 776 |
Genomic view of the NOMO1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.