MRPS18A
mitochondrial ribosomal protein S18A | FLJ10548, MRPS18-3, mL66

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S18P family. The encoded protein is one of three that has significant sequence similarity to bacterial S18 proteins. The primary sequences of the three human mitochondrial S18 proteins are no more closely related to each other than they are to the prokaryotic S18 proteins. A pseudogene corresponding to this gene is found on chromosome 3p. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Jul 2010]

Member of: DE-1
Biological processes 19 terms
Expression (TPM)
MRPS18A — as a Regulated Gene

TFs regulating MRPS18A 0 TFs

Transcription factors with Perturb-seq knockdown data for MRPS18A. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = MRPS18A upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to MRPS18A

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of MRPS18A, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr6:43,426,936–43,428,340 260.1 kb Distal (>10kb) Multiome 919
chr6:43,454,362–43,454,991 233.1 kb Distal (>10kb) Multiome 686
chr6:43,477,347–43,478,043 210.2 kb Distal (>10kb) Multiome 747
chr6:43,506,605–43,507,204 180.9 kb Distal (>10kb) Multiome 474
chr6:43,509,337–43,511,016 177.4 kb Distal (>10kb) Multiome 734
chr6:43,516,463–43,517,515 170.8 kb Distal (>10kb) Multiome 904
chr6:43,575,269–43,576,483 111.7 kb Distal (>10kb) Multiome 1044
chr6:43,628,488–43,630,447 57.6 kb Distal (>10kb) Multiome 1157
chr6:43,635,496–43,636,104 52.0 kb Distal (>10kb) Multiome 941
chr6:43,644,712–43,645,902 42.5 kb Distal (>10kb) Multiome 255
chr6:43,667,273–43,667,900 20.4 kb Distal (>10kb) Multiome 625
chr6:43,667,997–43,668,873 19.4 kb Distal (>10kb) Multiome 664
chr6:43,687,697–43,687,956 at TSS At TSS 711
chr6:43,695,239–43,695,940 7.9 kb Proximal (<10kb) Multiome 207
chr6:43,702,335–43,703,403 15.2 kb Distal (>10kb) Multiome 713
chr6:43,706,840–43,708,370 20.2 kb Distal (>10kb) Multiome 307
chr6:43,739,421–43,740,065 52.0 kb Distal (>10kb) Multiome HiCAR 175
chr6:43,769,188–43,772,162 82.2 kb Distal (>10kb) Multiome HiCAR 1112
chr6:43,774,651–43,775,250 87.2 kb Distal (>10kb) Multiome 440
chr6:43,926,273–43,928,465 239.4 kb Distal (>10kb) Multiome 1000
chr6:43,951,107–43,951,921 263.7 kb Distal (>10kb) Multiome HiCAR 591
chr6:44,002,061–44,003,708 314.9 kb Distal (>10kb) Multiome HiCAR 581

Genome Browser

Genomic view of the MRPS18A locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr6:43,416,936 – 44,013,708
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq