Transcription factors with Perturb-seq knockdown data for MIR23AHG. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = MIR23AHG upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of MIR23AHG, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:13,833,328–13,834,074 | 8.9 kb | Proximal (<10kb) | 638 | |
| chr19:13,841,592–13,843,282 | at TSS | At TSS | 600 | |
| chr19:13,846,368–13,848,126 | 3.4 kb | Proximal (<10kb) | 1040 | |
| chr19:13,850,226–13,850,701 | 7.3 kb | Proximal (<10kb) | 516 |
Genomic view of the MIR23AHG locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.