Transcription factors with Perturb-seq knockdown data for MIR193BHG. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = MIR193BHG upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of MIR193BHG, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr16:14,070,605–14,071,845 | 231.0 kb | Distal (>10kb) Multiome | 900 | |
| chr16:14,285,067–14,286,457 | 16.4 kb | Distal (>10kb) Multiome | 1045 | |
| chr16:14,299,566–14,299,771 | 2.5 kb | Proximal (<10kb) | 288 | |
| chr16:14,301,483–14,303,129 | 52 bp | At TSS Multiome | 617 | |
| chr16:14,309,568–14,309,797 | 7.3 kb | Proximal (<10kb) | 277 | |
| chr16:14,405,593–14,406,150 | 103.6 kb | Distal (>10kb) Multiome | 514 |
Genomic view of the MIR193BHG locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.