Transcription factors with Perturb-seq knockdown data for LRRC37A6P. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LRRC37A6P upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LRRC37A6P, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr10:27,241,284–27,242,441 | 9.4 kb | Proximal (<10kb) | 851 | |
| chr10:27,242,763–27,243,117 | 8.7 kb | Proximal (<10kb) | 512 | |
| chr10:27,252,226–27,253,021 | 433 bp | At TSS | 405 | |
| chr10:27,258,839–27,259,511 | 7.0 kb | Proximal (<10kb) | 220 |
Genomic view of the LRRC37A6P locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.