Transcription factors with Perturb-seq knockdown data for LINC01551. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LINC01551 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LINC01551, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr14:28,765,678–28,768,680 | 6.2 kb | Proximal (<10kb) | 601 | |
| chr14:28,773,909–28,775,119 | at TSS | At TSS | 225 | |
| chr14:28,777,932–28,778,468 | 3.1 kb | Proximal (<10kb) | 56 | |
| chr14:28,785,147–28,785,960 | at TSS | At TSS | 203 |
Genomic view of the LINC01551 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.