Transcription factors with Perturb-seq knockdown data for LINC00623. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LINC00623 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LINC00623, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:120,850,329–120,851,031 | 62.3 kb | Distal (>10kb) Multiome | 638 | |
| chr1:120,942,172–120,942,875 | 29.3 kb | Distal (>10kb) Multiome | 405 | |
| chr1:121,097,592–121,098,036 | 184.4 kb | Distal (>10kb) Multiome | 145 | |
| chr1:121,184,355–121,185,270 | 271.5 kb | Distal (>10kb) Multiome | 219 |
Genomic view of the LINC00623 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.