Transcription factors with Perturb-seq knockdown data for LINC00324. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LINC00324 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LINC00324, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr17:8,220,148–8,220,526 | 3.5 kb | Proximal (<10kb) | 201 | |
| chr17:8,220,662–8,224,088 | at TSS | At TSS | 1171 | |
| chr17:8,225,984–8,226,420 | 1.9 kb | Proximal (<10kb) | 374 | |
| chr17:8,226,529–8,227,280 | 2.5 kb | Proximal (<10kb) | 565 |
Genomic view of the LINC00324 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.