Transcription factors with Perturb-seq knockdown data for LINC00265. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LINC00265 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LINC00265, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:39,566,027–39,566,876 | 167.2 kb | Distal (>10kb) Multiome HiCAR | 879 | |
| chr7:39,622,891–39,624,257 | 110.1 kb | Distal (>10kb) Multiome | 867 | |
| chr7:39,732,821–39,734,237 | 178 bp | At TSS Multiome | 702 | |
| chr7:39,735,664–39,736,233 | 2.1 kb | Proximal (<10kb) | 159 | |
| chr7:39,742,071–39,742,566 | 8.5 kb | Proximal (<10kb) | 162 | |
| chr7:39,833,196–39,834,329 | 99.9 kb | Distal (>10kb) Multiome | 153 | |
| chr7:39,948,967–39,952,018 | 218.1 kb | Distal (>10kb) Multiome | 1098 |
Genomic view of the LINC00265 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.