Predicted to be involved in regulation of DNA-templated transcription. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for KRBA1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = KRBA1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of KRBA1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:149,414,692–149,415,889 | 299.7 kb | Distal (>10kb) Multiome | 271 | |
| chr7:149,421,846–149,422,651 | 292.4 kb | Distal (>10kb) Multiome | 665 | |
| chr7:149,459,399–149,461,328 | 254.1 kb | Distal (>10kb) Multiome | 734 | |
| chr7:149,496,856–149,498,276 | 217.0 kb | Distal (>10kb) Multiome | 651 | |
| chr7:149,624,082–149,625,237 | 90.0 kb | Distal (>10kb) Multiome | 945 | |
| chr7:149,635,565–149,636,149 | 79.0 kb | Distal (>10kb) Multiome | 244 | |
| chr7:149,662,437–149,663,314 | 52.0 kb | Distal (>10kb) Multiome | 244 | |
| chr7:149,690,670–149,691,411 | 23.6 kb | Distal (>10kb) Multiome | 702 | |
| chr7:149,713,614–149,715,757 | 37 bp | At TSS Multiome | 639 | |
| chr7:149,742,187–149,742,741 | 27.6 kb | Distal (>10kb) Multiome | 398 | |
| chr7:149,764,497–149,766,171 | 50.2 kb | Distal (>10kb) Multiome | 166 | |
| chr7:149,771,145–149,773,373 | 57.1 kb | Distal (>10kb) Multiome | 598 | |
| chr7:149,790,022–149,790,694 | 75.6 kb | Distal (>10kb) Multiome | 229 | |
| chr7:149,837,911–149,839,325 | 123.6 kb | Distal (>10kb) Multiome | 871 | |
| chr7:149,872,817–149,874,446 | 159.1 kb | Distal (>10kb) Multiome | 826 |
Genomic view of the KRBA1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.