Transcription factors with Perturb-seq knockdown data for KCNAB1-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = KCNAB1-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of KCNAB1-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr3:156,442,711–156,443,660 | 3.2 kb | Proximal (<10kb) | 50 | |
| chr3:156,448,396–156,448,599 | 1.5 kb | Proximal (<10kb) | 74 | |
| chr3:156,450,108–156,450,290 | 3.2 kb | Proximal (<10kb) | 86 | |
| chr3:156,455,670–156,456,078 | 8.8 kb | Proximal (<10kb) | 220 | |
| chr3:156,456,730–156,457,712 | 9.8 kb | Proximal (<10kb) | 238 |
Genomic view of the KCNAB1-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.