Transcription factors with Perturb-seq knockdown data for ICAM4-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ICAM4-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ICAM4-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:10,286,849–10,287,511 | 1.5 kb | Proximal (<10kb) | 621 | |
| chr19:10,288,709–10,290,833 | at TSS | At TSS | 688 | |
| chr19:10,291,168–10,291,703 | 2.1 kb | Proximal (<10kb) | 380 | |
| chr19:10,292,085–10,293,198 | 3.1 kb | Proximal (<10kb) | 441 | |
| chr19:10,296,315–10,296,640 | 7.3 kb | Proximal (<10kb) | 188 |
Genomic view of the ICAM4-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.