GP1BB
glycoprotein Ib platelet subunit beta | CD42c, GPIbbeta

Platelet glycoprotein Ib (GPIb) is a heterodimeric transmembrane protein consisting of a disulfide-linked 140 kD alpha chain and 22 kD beta chain. It is part of the GPIb-V-IX system that constitutes the receptor for von Willebrand factor (VWF), and mediates platelet adhesion in the arterial circulation. GPIb alpha chain provides the VWF binding site, and GPIb beta contributes to surface expression of the receptor and participates in transmembrane signaling through phosphorylation of its intracellular domain. Mutations in the GPIb beta subunit have been associated with Bernard-Soulier syndrome, velocardiofacial syndrome and giant platelet disorder. The 206 amino acid precursor of GPIb beta is synthesized from a 1.0 kb mRNA expressed in plateletes and megakaryocytes. A 411 amino acid protein arising from a longer, unspliced transcript in endothelial cells has been described; however, the authenticity of this product has been questioned. Yet another less abundant GPIb beta mRNA species of 3.5 kb, expressed in nonhematopoietic tissues such as endothelium, brain and heart, was shown to result from inefficient usage of a non-consensus polyA signal in the neighboring upstream gene (SEPT5, septin 5). In the absence of polyadenylation from its own imperfect site, the SEPT5 gene produces read-through transcripts that use the consensus polyA signal of this gene. [provided by RefSeq, Dec 2010]

Biological processes 17 terms
Expression (TPM)
GP1BB — as a Regulated Gene

TFs regulating GP1BB 0 TFs

Transcription factors with Perturb-seq knockdown data for GP1BB. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = GP1BB upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to GP1BB

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of GP1BB, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr22:19,431,488–19,432,799 291.2 kb Distal (>10kb) Multiome 1140
chr22:19,446,962–19,448,379 275.9 kb Distal (>10kb) Multiome 889
chr22:19,478,898–19,480,311 243.8 kb Distal (>10kb) Multiome 867
chr22:19,523,289–19,524,793 200.1 kb Distal (>10kb) Multiome 242
chr22:19,717,840–19,718,731 4.8 kb Proximal (<10kb) 592
chr22:19,723,413–19,724,584 661 bp At TSS Multiome 572
chr22:19,730,516–19,731,296 7.0 kb Proximal (<10kb) 743
chr22:19,765,840–19,766,429 42.6 kb Distal (>10kb) Multiome 174
chr22:19,854,381–19,855,705 131.4 kb Distal (>10kb) Multiome 1014
chr22:19,959,058–19,959,828 236.0 kb Distal (>10kb) Multiome 576
chr22:19,962,339–19,962,798 239.0 kb Distal (>10kb) Multiome 442
chr22:19,986,350–19,987,426 263.6 kb Distal (>10kb) Multiome 539
chr22:20,016,068–20,017,437 293.3 kb Distal (>10kb) Multiome 640
chr22:20,020,662–20,021,745 297.5 kb Distal (>10kb) Multiome 718

Genome Browser

Genomic view of the GP1BB locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr22:19,421,488 – 20,031,745
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq