Galanin is an important neuromodulator present in the brain, gastrointestinal system, and hypothalamopituitary axis. It is a 30-amino acid non-C-terminally amidated peptide that potently stimulates growth hormone secretion, inhibits cardiac vagal slowing of heart rate, abolishes sinus arrhythmia, and inhibits postprandial gastrointestinal motility. The actions of galanin are mediated through interaction with specific membrane receptors that are members of the 7-transmembrane family of G protein-coupled receptors. GALR2 interacts with the N-terminal residues of the galanin peptide. The primary signaling mechanism for GALR2 is through the phospholipase C/protein kinase C pathway (via Gq), in contrast to GALR1, which communicates its intracellular signal by inhibition of adenylyl cyclase through Gi. However, it has been demonstrated that GALR2 couples efficiently to both the Gq and Gi proteins to simultaneously activate 2 independent signal transduction pathways. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for GALR2. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = GALR2 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of GALR2, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr17:75,778,786–75,780,191 | 294.9 kb | Distal (>10kb) Multiome | 1118 | |
| chr17:75,784,060–75,785,640 | 289.9 kb | Distal (>10kb) Multiome | 1176 | |
| chr17:75,827,420–75,828,293 | 247.0 kb | Distal (>10kb) Multiome | 404 | |
| chr17:75,830,158–75,830,695 | 244.4 kb | Distal (>10kb) Multiome | 190 | |
| chr17:75,832,912–75,833,396 | 241.6 kb | Distal (>10kb) Multiome | 104 | |
| chr17:75,845,103–75,845,662 | 229.4 kb | Distal (>10kb) Multiome | 703 | |
| chr17:75,854,955–75,856,363 | 219.3 kb | Distal (>10kb) Multiome | 1038 | |
| chr17:75,877,486–75,878,900 | 196.7 kb | Distal (>10kb) Multiome | 884 | |
| chr17:75,896,392–75,897,754 | 177.8 kb | Distal (>10kb) Multiome | 831 | |
| chr17:75,904,371–75,905,532 | 169.7 kb | Distal (>10kb) Multiome | 1045 | |
| chr17:75,940,734–75,941,471 | 133.7 kb | Distal (>10kb) Multiome | 982 | |
| chr17:75,978,646–75,980,102 | 95.4 kb | Distal (>10kb) Multiome | 1090 | |
| chr17:75,983,292–75,984,226 | 91.0 kb | Distal (>10kb) Multiome | 236 | |
| chr17:76,014,120–76,014,727 | 60.4 kb | Distal (>10kb) Multiome | 489 | |
| chr17:76,029,331–76,030,158 | 45.1 kb | Distal (>10kb) Multiome | 722 | |
| chr17:76,067,009–76,067,331 | 7.4 kb | Proximal (<10kb) | 11 | |
| chr17:76,072,173–76,072,853 | 2.2 kb | Proximal (<10kb) Multiome | 893 | |
| chr17:76,074,414–76,075,796 | 130 bp | At TSS Multiome | 280 | |
| chr17:76,103,272–76,104,343 | 29.0 kb | Distal (>10kb) Multiome | 798 | |
| chr17:76,121,142–76,122,265 | 46.8 kb | Distal (>10kb) Multiome | 689 | |
| chr17:76,132,004–76,133,216 | 57.9 kb | Distal (>10kb) Multiome | 536 | |
| chr17:76,135,151–76,135,652 | 60.5 kb | Distal (>10kb) Multiome | 104 | |
| chr17:76,141,012–76,141,958 | 66.6 kb | Distal (>10kb) Multiome | 616 | |
| chr17:76,240,278–76,241,169 | 165.9 kb | Distal (>10kb) Multiome | 560 | |
| chr17:76,264,834–76,266,286 | 190.4 kb | Distal (>10kb) Multiome | 868 | |
| chr17:76,353,245–76,354,535 | 279.2 kb | Distal (>10kb) Multiome | 1071 |
Genomic view of the GALR2 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.