FAM174C
FLJ20640, C19orf24
Member of: DE-1
Expression (TPM)
FAM174C — as a Regulated Gene

TFs regulating FAM174C 0 TFs

Transcription factors with Perturb-seq knockdown data for FAM174C. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = FAM174C upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to FAM174C

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of FAM174C, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr19:982,565–983,215 292.7 kb Distal (>10kb) Multiome 590
chr19:984,046–985,154 291.0 kb Distal (>10kb) Multiome 829
chr19:1,000,142–1,000,881 275.2 kb Distal (>10kb) Multiome 399
chr19:1,020,611–1,022,069 254.1 kb Distal (>10kb) Multiome 1017
chr19:1,026,155–1,026,856 249.0 kb Distal (>10kb) Multiome 598
chr19:1,027,770–1,028,926 247.0 kb Distal (>10kb) Multiome 584
chr19:1,039,648–1,040,400 235.5 kb Distal (>10kb) Multiome 684
chr19:1,040,481–1,041,402 234.3 kb Distal (>10kb) Multiome 556
chr19:1,044,758–1,045,598 230.2 kb Distal (>10kb) Multiome 402
chr19:1,061,840–1,062,923 213.0 kb Distal (>10kb) Multiome 204
chr19:1,063,045–1,065,722 210.7 kb Distal (>10kb) Multiome 681
chr19:1,066,682–1,067,587 208.3 kb Distal (>10kb) Multiome 489
chr19:1,071,107–1,071,721 204.4 kb Distal (>10kb) Multiome 178
chr19:1,081,317–1,083,172 193.1 kb Distal (>10kb) Multiome 484
chr19:1,094,985–1,095,654 180.1 kb Distal (>10kb) Multiome 671
chr19:1,103,487–1,105,654 171.5 kb Distal (>10kb) Multiome 849
chr19:1,112,029–1,112,884 163.2 kb Distal (>10kb) Multiome 294
chr19:1,113,014–1,114,139 162.0 kb Distal (>10kb) Multiome 690
chr19:1,122,934–1,123,720 152.3 kb Distal (>10kb) Multiome 231
chr19:1,173,441–1,174,438 101.3 kb Distal (>10kb) Multiome 682
chr19:1,194,370–1,194,985 80.9 kb Distal (>10kb) Multiome 531
chr19:1,205,175–1,206,374 69.9 kb Distal (>10kb) Multiome 746
chr19:1,237,080–1,238,434 37.4 kb Distal (>10kb) Multiome 430
chr19:1,239,513–1,242,539 33.8 kb Distal (>10kb) Multiome 889
chr19:1,244,253–1,244,857 31.0 kb Distal (>10kb) Multiome 590
chr19:1,247,981–1,252,501 24.5 kb Distal (>10kb) Multiome 1136
chr19:1,259,185–1,262,955 16.1 kb Distal (>10kb) Multiome 1070
chr19:1,265,280–1,270,235 6.2 kb Proximal (<10kb) Multiome 1171
chr19:1,274,423–1,276,502 205 bp At TSS Multiome 967
chr19:1,279,769–1,280,008 4.2 kb Proximal (<10kb) 378
chr19:1,285,317–1,286,108 10.2 kb Distal (>10kb) Multiome 277
chr19:1,354,303–1,355,411 79.4 kb Distal (>10kb) Multiome 688
chr19:1,383,122–1,384,333 108.1 kb Distal (>10kb) Multiome HiCAR 1228
chr19:1,401,101–1,401,839 126.0 kb Distal (>10kb) Multiome 540
chr19:1,406,589–1,408,783 131.9 kb Distal (>10kb) Multiome 911
chr19:1,415,008–1,415,721 140.0 kb Distal (>10kb) Multiome 597
chr19:1,437,988–1,438,998 162.8 kb Distal (>10kb) Multiome 1076
chr19:1,444,785–1,447,383 169.7 kb Distal (>10kb) Multiome 797
chr19:1,455,191–1,456,421 180.3 kb Distal (>10kb) Multiome 491
chr19:1,468,941–1,469,903 193.7 kb Distal (>10kb) Multiome 242
chr19:1,470,088–1,471,597 195.2 kb Distal (>10kb) Multiome 544
chr19:1,478,772–1,479,848 203.8 kb Distal (>10kb) Multiome 857
chr19:1,489,566–1,491,829 215.3 kb Distal (>10kb) Multiome 836
chr19:1,507,230–1,508,699 232.6 kb Distal (>10kb) Multiome 596
chr19:1,512,960–1,513,686 237.6 kb Distal (>10kb) Multiome 541
chr19:1,523,798–1,524,624 248.5 kb Distal (>10kb) Multiome 263
chr19:1,566,277–1,568,916 291.2 kb Distal (>10kb) Multiome 748

Genome Browser

Genomic view of the FAM174C locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr19:972,565 – 1,578,916
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq