Transcription factors with Perturb-seq knockdown data for ENSG00000288817. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000288817 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000288817, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chrX:12,970,729–12,971,194 | 2.4 kb | Proximal (<10kb) | 189 | |
| chrX:12,974,537–12,975,757 | 971 bp | At TSS | 603 | |
| chrX:12,976,162–12,976,464 | 2.6 kb | Proximal (<10kb) | 241 | |
| chrX:12,978,298–12,978,601 | 4.7 kb | Proximal (<10kb) | 344 |
Genomic view of the ENSG00000288817 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.