Transcription factors with Perturb-seq knockdown data for ENSG00000288704. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000288704 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000288704, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr19:1,239,513–1,242,539 | 7.0 kb | Proximal (<10kb) | 889 | |
| chr19:1,244,253–1,244,857 | 4.7 kb | Proximal (<10kb) | 590 | |
| chr19:1,247,981–1,252,501 | at TSS | At TSS | 1136 | |
| chr19:1,259,185–1,262,955 | 9.6 kb | Proximal (<10kb) | 1070 |
Genomic view of the ENSG00000288704 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.