Transcription factors with Perturb-seq knockdown data for ENSG00000285407. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000285407 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000285407, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:66,929,624–66,931,089 | 1951.3 kb | Distal (>10kb) Multiome HiCAR | 922 | |
| chr1:68,881,256–68,881,831 | at TSS | At TSS | 47 | |
| chr1:70,220,975–70,221,995 | 1339.9 kb | Distal (>10kb) Multiome HiCAR | 912 |
Genomic view of the ENSG00000285407 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.