Transcription factors with Perturb-seq knockdown data for ENSG00000272908. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000272908 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000272908, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr7:38,329,010–38,330,278 | at TSS | At TSS | 103 | |
| chr7:38,330,757–38,331,521 | 1.1 kb | Proximal (<10kb) | 166 | |
| chr7:38,331,896–38,332,124 | 2.3 kb | Proximal (<10kb) | 106 | |
| chr7:38,332,228–38,332,845 | 2.6 kb | Proximal (<10kb) | 201 | |
| chr7:38,335,451–38,336,337 | 5.8 kb | Proximal (<10kb) | 492 |
Genomic view of the ENSG00000272908 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.