Transcription factors with Perturb-seq knockdown data for ENSG00000233850. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000233850 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000233850, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr2:95,022,147–95,022,768 | 3.9 kb | Proximal (<10kb) | 296 | |
| chr2:95,023,676–95,024,482 | 2.2 kb | Proximal (<10kb) | 31 | |
| chr2:95,024,959–95,026,307 | 401 bp | At TSS | 212 | |
| chr2:95,026,439–95,026,953 | at TSS | At TSS | 89 |
Genomic view of the ENSG00000233850 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.