Transcription factors with Perturb-seq knockdown data for ENEMAL. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENEMAL upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENEMAL, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr11:65,468,935–65,469,127 | 8.4 kb | Proximal (<10kb) | 393 | |
| chr11:65,477,100–65,477,990 | at TSS | At TSS | 991 | |
| chr11:65,479,394–65,479,745 | 1.8 kb | Proximal (<10kb) | 385 | |
| chr11:65,487,451–65,488,490 | 9.9 kb | Proximal (<10kb) | 706 |
Genomic view of the ENEMAL locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.