Transcription factors with Perturb-seq knockdown data for DUSP13B. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = DUSP13B upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of DUSP13B, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr10:75,099,885–75,100,763 | 8.4 kb | Proximal (<10kb) | 419 | |
| chr10:75,106,213–75,106,749 | 2.4 kb | Proximal (<10kb) | 82 | |
| chr10:75,108,500–75,109,317 | at TSS | At TSS | 374 | |
| chr10:75,111,043–75,112,358 | 1.9 kb | Proximal (<10kb) | 857 |
Genomic view of the DUSP13B locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.