Transcription factors with Perturb-seq knockdown data for DICER1-AS1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = DICER1-AS1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of DICER1-AS1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr14:94,893,323–94,894,201 | 264.0 kb | Distal (>10kb) Multiome | 189 | |
| chr14:95,156,655–95,158,127 | 164 bp | At TSS Multiome | 838 | |
| chr14:95,162,523–95,163,047 | 4.8 kb | Proximal (<10kb) | 23 | |
| chr14:95,291,132–95,291,627 | 133.7 kb | Distal (>10kb) Multiome | 174 | |
| chr14:95,319,274–95,320,393 | 162.2 kb | Distal (>10kb) Multiome | 440 |
Genomic view of the DICER1-AS1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.